I just folded my first protein - Page 30


Page 30 of 68 FirstFirst ... 2026272829303132333440 ... LastLast
Results 436 to 450 of 1006

Thread: I just folded my first protein

  1. #436
    Join Date
    Oct 2002
    Location
    Republic of Texas
    Posts
    5,898
    the one from portage works fine....
    what about this?

    $ cat /opt/foldingathome/client1/client.cfg
    [settings]
    username=je_fro
    team=36480
    asknet=no
    bigpackets=yes
    machineid=1
    local=75

    [http]
    active=no
    host=localhost
    port=8080

    [core]
    checkpoint=10
    Need help in realtime? Visit us at #linuxnewbie on irc.libera.chat

    Few of us will do as much for our fellow man as he has done.
    --Andrew Morton on RMS

  2. #437
    Join Date
    Jun 2003
    Location
    Burlington, ON (near Toronto)
    Posts
    630
    Code:
    # cat /opt/foldingathome/client1/client.cfg
    [settings]
    username=ions
    team=36480
    asknet=no
    bigpackets=yes
    machineid=1
    
    [http]
    active=no
    host=localhost
    port=8080

  3. #438
    Join Date
    Oct 2002
    Location
    Republic of Texas
    Posts
    5,898
    Code:
    jeff@speedy ~ $ ls /opt/foldingathome/        
    client1  client3  client5  client7  copy_client_config
    client2  client4  client6  client8  initfolding
    jeff@speedy ~ $ ls /opt/foldingathome/client1/
    FAHlog-Prev.txt  FahCore_79.exe  client.cfg            unitinfo.txt
    FAHlog.txt       FahCore_7a.exe  foldingathome         work
    FahCore_65.exe   FahCore_82.exe  machinedependent.dat
    FahCore_78.exe   MyFolding.html  queue.dat
    Do you have all that?
    Need help in realtime? Visit us at #linuxnewbie on irc.libera.chat

    Few of us will do as much for our fellow man as he has done.
    --Andrew Morton on RMS

  4. #439
    Join Date
    Oct 2002
    Location
    Republic of Texas
    Posts
    5,898
    oh, and everything in /etc/conf.d/foldingathome is commented out except for CPU=0
    Need help in realtime? Visit us at #linuxnewbie on irc.libera.chat

    Few of us will do as much for our fellow man as he has done.
    --Andrew Morton on RMS

  5. #440
    Join Date
    Jun 2003
    Location
    Burlington, ON (near Toronto)
    Posts
    630
    Code:
    # ls /opt/foldingathome/
    client1  client3  client5  client7  copy_client_config
    client2  client4  client6  client8  initfolding
    localhost client1 # ls /opt/foldingathome/client1/
    FAHlog.txt  MyFolding.html  client.cfg  foldingathome  machinedependent.dat
    Yup, everything in /etc/conf.d/foldingathome is commented out except for CPU=0.

  6. #441
    Join Date
    Jun 2003
    Location
    Burlington, ON (near Toronto)
    Posts
    630
    Code:
    # cat FAHlog.txt
    
    
    --- Opening Log file [January 25 00:36:29]
    
    
    # Linux Console Edition #######################################################
    ###############################################################################
    
                           Folding@Home Client Version 5.02
    
                              http://folding.stanford.edu
    
    ###############################################################################
    ###############################################################################
    
    Launch directory: /opt/foldingathome/client1
    Executable: /opt/foldingathome/client1/foldingathome
    Arguments: -configonly
    
    [00:36:29] Configuring Folding@Home...
    
    
    [00:36:49] - Ask before connecting: No
    [00:36:49] - User name: ions (Team 36480)
    [00:36:49] - User ID not found locally
    [00:36:49] + Requesting User ID from server
    [00:36:49] - Machine ID: 1
    [00:36:49]
    [00:36:49] -configonly flag given, so exiting.
    
    
    --- Opening Log file [January 25 00:40:51]
    
    
    # Linux Console Edition #######################################################
    ###############################################################################
    
                           Folding@Home Client Version 5.02
    
                              http://folding.stanford.edu
    
    ###############################################################################
    ###############################################################################
    
    Launch directory: /opt/foldingathome/client1
    Executable: /opt/foldingathome/client1/foldingathome
    Arguments: -configonly
    
    [00:40:51] - Ask before connecting: No
    [00:40:51] - User name: ions (Team 36480)
    [00:40:51] - User ID: 7846A4AB29642002
    [00:40:51] - Machine ID: 1
    [00:40:51]
    [00:40:51] Configuring Folding@Home...
    
    
    [00:41:06] - Ask before connecting: No
    [00:41:06] - User name: ions (Team 36480)
    [00:41:06] - User ID: 7846A4AB29642002
    [00:41:06] - Machine ID: 1
    [00:41:06]
    [00:41:06] -configonly flag given, so exiting.
    
    
    --- Opening Log file [January 26 14:26:40]
    
    
    # Linux Console Edition #######################################################
    ###############################################################################
    
                           Folding@Home Client Version 5.02
    
                              http://folding.stanford.edu
    
    ###############################################################################
    ###############################################################################
    
    Launch directory: /opt/foldingathome/client1
    Executable: /opt/foldingathome/client1/foldingathome
    Arguments: -configonly
    
    [14:26:40] - Ask before connecting: No
    [14:26:40] - User name: ions (Team 36480)
    [14:26:40] - User ID: 7846A4AB29642002
    [14:26:40] - Machine ID: 1
    [14:26:40]
    [14:26:40] Configuring Folding@Home...
    
    
    [14:26:50] - Ask before connecting: No
    [14:26:50] - User name: ions (Team 36480)
    [14:26:50] - User ID: 7846A4AB29642002
    [14:26:50] - Machine ID: 1
    [14:26:50]
    [14:26:50] -configonly flag given, so exiting.
    
    
    --- Opening Log file [January 26 14:31:01]
    
    
    # Linux Console Edition #######################################################
    ###############################################################################
    
                           Folding@Home Client Version 5.02
    
                              http://folding.stanford.edu
    
    ###############################################################################
    ###############################################################################
    
    Launch directory: /opt/foldingathome/client1
    Executable: /opt/foldingathome/client1/foldingathome
    Arguments: -configonly
    
    [14:31:01] - Ask before connecting: No
    [14:31:01] - User name: ions (Team 36480)
    [14:31:01] - User ID: 7846A4AB29642002
    [14:31:01] - Machine ID: 1
    [14:31:01]
    [14:31:01] Configuring Folding@Home...
    
    
    [14:31:07] - Ask before connecting: No
    [14:31:07] - User name: ions (Team 36480)
    [14:31:07] - User ID: 7846A4AB29642002
    [14:31:07] - Machine ID: 1
    [14:31:07]
    [14:31:07] -configonly flag given, so exiting.

  7. #442
    Join Date
    Oct 2002
    Location
    Illinois
    Posts
    3,281
    what does your init script say? /etc/rc.d/fah or something

  8. #443
    Join Date
    Oct 2002
    Location
    Republic of Texas
    Posts
    5,898
    good idea!
    here's mine:
    Code:
    $ cat /etc/init.d/foldingathome 
    #!/sbin/runscript
    # Copyright 1999-2004 Gentoo Foundation
    # Distributed under the terms of the GNU General Public License v2
    # $Header: /var/cvsroot/gentoo-x86/sci-biology/foldingathome/files/init-5.0.2-r3,v 1.2 2005/03/03 14:40:55 lostlogic Exp $
    
    opts="${opts} unitinfo"
    
    do_config() {
            if [ -z "${CPU}" ] || [ "${CPU}" == "0" ]; then
                    if [ -r /proc/cpuinfo ]; then
                            CPU=`grep "^processor[[:space:]]*:" /proc/cpuinfo | wc -l`
                            if (( $CPU > 8 )); then
                                    CPU=8
                            fi
                    else
                            CPU=1
                    fi
            fi
    }
    
    unitinfo() {
            do_config
            for (($CPU; CPU > 0; CPU--)); do
                    einfo "CPU ${CPU} $(head -n1 /opt/foldingathome/client${CPU}/unitinfo.txt):"
                    sed -e '1,2d' /opt/foldingathome/client${CPU}/unitinfo.txt
            done
    }
    
    start() {
            do_config
            su foldingathome -c /opt/foldingathome/copy_client_config
            for (($CPU; CPU > 0; CPU--)); do
                    ebegin "Starting Folding@Home on CPU ${CPU}"
                    cd /opt/foldingathome/client${CPU}/
                    nice -n 19 su foldingathome -c "/opt/foldingathome/client${CPU}/foldingathome ${FOLD_OPTS}" &>/dev/null &
                    eend $?
            done
    }
    
    stop() {
            do_config
            for (($CPU; CPU > 0; CPU--)); do
                    ebegin "Stopping Folding@Home on CPU ${CPU}"
                    cd /opt/foldingathome/client${CPU}/
                    for I in FahCore*.exe; do
                            if ps ax|grep $I > /dev/null 2>&1; then
                                    killall -q $I > /dev/null 2>&1
                            fi
                    done
                    sleep 1
                    if ps ax|grep '[/]opt[/]foldingathome/client${CPU}/' > /dev/null 2>&1; then
                            eend 1
                    else
                            eend 0
                    fi
            done
    }
    Need help in realtime? Visit us at #linuxnewbie on irc.libera.chat

    Few of us will do as much for our fellow man as he has done.
    --Andrew Morton on RMS

  9. #444
    Join Date
    Jun 2003
    Location
    Burlington, ON (near Toronto)
    Posts
    630
    Well my folding is back in the high 300s so it must be reporting something. Still no unitinfo file though.

    Code:
    # cat /etc/init.d/foldingathome
    #!/sbin/runscript
    # Copyright 1999-2004 Gentoo Foundation
    # Distributed under the terms of the GNU General Public License v2
    # $Header: /var/cvsroot/gentoo-x86/sci-biology/foldingathome/files/init-5.0.2-r4 ,v 1.1 2005/08/14 02:31:39 ribosome Exp $
    
    opts="${opts} unitinfo"
    
    do_config() {
            if [ -z "${CPU}" ] || [ "${CPU}" == "0" ]; then
                    if [ -r /proc/cpuinfo ]; then
                            CPU=`grep "^processor[[:space:]]*:" /proc/cpuinfo | wc - l`
                            if (( $CPU > 8 )); then
                                    CPU=8
                            fi
                    else
                            CPU=1
                    fi
            fi
    }
    
    unitinfo() {
            do_config
            for (($CPU; CPU > 0; CPU--)); do
                    einfo "CPU ${CPU} $(head -n1 /opt/foldingathome/client${CPU}/uni tinfo.txt):"
                    sed -e '1,2d' /opt/foldingathome/client${CPU}/unitinfo.txt
            done
    }
    
    start() {
            do_config
            su foldingathome -c /opt/foldingathome/copy_client_config
            for (($CPU; CPU > 0; CPU--)); do
                    ebegin "Starting Folding@Home on CPU ${CPU}"
                    cd /opt/foldingathome/client${CPU}/
                    start-stop-daemon --chuid foldingathome --nicelevel 19 --start - -background --exec /opt/foldingathome/client${CPU}/foldingathome -- ${FOLD_OPTS}
                    eend $?
            done
    }
    
    stop() {
            do_config
            for (($CPU; CPU > 0; CPU--)); do
                    ebegin "Stopping Folding@Home on CPU ${CPU}"
                    start-stop-daemon --stop --user foldingathome --exec /opt/foldin gathome/client${CPU}/foldingathome
                    cd /opt/foldingathome/client${CPU}/
                    for I in FahCore*.exe; do
                            if ps ax|grep $I > /dev/null 2>&1; then
                                    killall -q $I > /dev/null 2>&1
                            fi
                    done
                    sleep 1
                    if ps ax|grep '[/]opt[/]foldingathome/client${CPU}/' > /dev/null  2>&1; then
                            eend 1
                    else
                            eend 0
                    fi
            done
    }

  10. #445
    Join Date
    Nov 2005
    Posts
    91
    Just joined the justlinux folding team. I only have unlimited internet access left for a few days and after that I go back to one of those prohibitive usage metered accounts. Despite that, I would still like to help and I was wondering how heavy folding is on the internet usage. On the f@h site, they talked about electricity usage but did not discuss the usage in terms of MB uploads/downloads. Congratulations on the high team rating (146 when I last checked).Thanks.

  11. #446
    Join Date
    Oct 2002
    Location
    Republic of Texas
    Posts
    5,898
    Welcome aboard!
    I think that the amount of bandwidth is trivial with F@H.
    here are a few cores that I have laying around...they are typcially 2-3 MB, and you'll only download one every few days. I hope you have a machine (or several) that is capable of straining your bandwidth constraints

    -rwxr-x--- 1 foldingathome users 3440948 Nov 29 04:30 FahCore_79.exe
    -rwxr-x--- 1 foldingathome users 3486728 Oct 31 14:08 FahCore_7a.exe
    -rwxr-x--- 1 foldingathome users 2542532 Oct 2 08:01 FahCore_82.exe
    Need help in realtime? Visit us at #linuxnewbie on irc.libera.chat

    Few of us will do as much for our fellow man as he has done.
    --Andrew Morton on RMS

  12. #447
    Join Date
    Jan 2004
    Location
    boston, mass USA
    Posts
    1,878

    Watch your backs!

    hehehehehe

    watch out dkeav and andermic, I have just added 15 more CPU's to my list!!

    I should have 15 more by the close of business tomorow!!!

    MUAHAUAHAUAAHA

  13. #448
    Join Date
    Oct 2002
    Location
    Illinois
    Posts
    3,281
    of course, you have permission for all those cpus right? you can't help the team from behind bars

  14. #449
    Join Date
    Jan 2004
    Location
    boston, mass USA
    Posts
    1,878
    there are PC's in prisons!

  15. #450
    Join Date
    Nov 2002
    Location
    Dayton, OH
    Posts
    986
    Wow! Adding 15 processors at a time! Are you in charge of a lab somewhere?
    "After all you've seen, after all the evidence, why can't you believe?"

    IBM Thinkpad T21
    750 Mhz P3, 128 MB PC100 RAM, CD-ROM, 10 GB IDE HDD
    Ubuntu 9.04 Minimal

Posting Permissions

  • You may not post new threads
  • You may not post replies
  • You may not post attachments
  • You may not edit your posts
  •